barplotTopGSEA: Plot top n pathways according to given stat

In kevincjnixon/BinfTools: Useful functions for standard analyses

Plot top n pathways according to given stat

Description

Plot top n pathways according to given stat

Usage

barplotTopGSEA(
  fgRes,
  n = 30,
  by = "padj",
  decreasing = FALSE,
  parseBader = TRUE,
  plot.title = "GSEA Bar plot"
)

Arguments

n	number of pathways to plot, default is 30.
by	The stat for selecting top pathways, default is padj
decreasing	Should the sort order be increasing or decreasing? Default is False.
parseBader	Boolean indicating if gene set names should be parsed for the output figure following Bader Lab nomenclature (i.e. '%' as delimiter)
plot.title	arbitrary plot title
fgsea	GSEA results from GSEA() function

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.