gsea_gmt: Make a custom gmt from GSEA terms
In kevincjnixon/BinfTools: Useful functions for standard analyses
gsea_gmt R Documentation
Make a custom gmt from GSEA terms
Description
Make a custom gmt from GSEA terms
Usage
gsea_gmt(terms, gmt, leadingEdge = FALSE)
Arguments
terms
Character vector of GSEA terms (pathway column from results of GSEA() function)
gmt
GMT file name or R object used to generate the gsea results using GSEA(). Can be GSEA results object if setting leadingEdge=TRUE.
leadingEdge
Boolean indicating if the leading edge genes only should be extracted. Default=FALSE
Value
List gmt object of genesets with terms from GSEA analysis
kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.
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| gsea_gmt | R Documentation |
Make a custom gmt from GSEA terms
Description
Make a custom gmt from GSEA terms
Usage
gsea_gmt(terms, gmt, leadingEdge = FALSE)
Arguments
terms |
Character vector of GSEA terms (pathway column from results of GSEA() function) |
gmt |
GMT file name or R object used to generate the gsea results using GSEA(). Can be GSEA results object if setting leadingEdge=TRUE. |
leadingEdge |
Boolean indicating if the leading edge genes only should be extracted. Default=FALSE |
Value
List gmt object of genesets with terms from GSEA analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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