prepareSamplesForDE: Prepare samples for DE analysis
In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq
prepareSamplesForDE R Documentation
Prepare samples for DE analysis
Description
Prepare samples for DE analysis
Usage
prepareSamplesForDE(
sample.groups,
resampling.method = c("loo", "bootstrap", "fix.cells", "fix.samples"),
n.resamplings = 30
)
Arguments
sample.groups
named list containing sample names
resampling.method
one of "loo" (leave-one-out, remove one sample per iteration), "bootstrap", "fix.cells" (fixed number of cells per subsample), or "fix.samples" (fixed number of samples per iteration)
n.resamplings
number of iterations (default=30)
kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.
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| prepareSamplesForDE | R Documentation |
Prepare samples for DE analysis
Description
Prepare samples for DE analysis
Usage
prepareSamplesForDE(
sample.groups,
resampling.method = c("loo", "bootstrap", "fix.cells", "fix.samples"),
n.resamplings = 30
)
Arguments
sample.groups |
named list containing sample names |
resampling.method |
one of "loo" (leave-one-out, remove one sample per iteration), "bootstrap", "fix.cells" (fixed number of cells per subsample), or "fix.samples" (fixed number of samples per iteration) |
n.resamplings |
number of iterations (default=30) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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