Riemann_dist_sets: Calculate distances between all pairs of samples from two...
In kimberlyroche/ROL: What the package does (short line)

Description Usage Arguments Details Value

Calculate distances between all pairs of samples from two sample sets

1	Riemann_dist_sets(A, B, n_hosts, host_samples_A, host_samples_B)

`A`	posterior sample matrix 1, ordered by sample number, the host concatenated across columns
`B`	posterior sample matrix 2, ordered by sample number, the host concatenated across columns
`n_hosts`	number of hosts in set A and B (must be equal)
`host_samples_A`	number of samples per host in set A
`host_samples_B`	number of samples per host in set B

Dimensions of the samples matrix are D rows x DN columns where D = no. of features and N = no. of samples. For two hosts "DUD" and "OMO" with 3 samples each, these are arranged column-wise in the matrix as (DUD 1, OMO 1, DUD 2, OMO 2, DUD 3, OMO 3).

distance

kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.