plot_MAP_covariance: Plot MAP covariance matrix for designated host

Description Usage Arguments Details Examples

View source: R/posterior_analyses.R

Description

Plot MAP covariance matrix for designated host

Usage

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plot_MAP_covariance(
  host,
  tax_level = "ASV",
  DLM = FALSE,
  logratio = "alr",
  show_plot = FALSE
)

Arguments

host

host short name (e.g. ACA)

tax_level

taxonomic level at which to agglomerate data

DLM

if TRUE, looks for DLM model fits instead of GP model fits

logratio

logratio covariance to render (clr and alr currently supported)

show_plot

show() plot of first 2 principle coordinates (in addition to rendering first 4 PCoA to files)

Details

Output are png files of covariance and correlation matrices.

Examples

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plot_MAP_covariance(host = "ZIZ", tax_level = "ASV")

kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.