Description Usage Arguments Details Examples
View source: R/posterior_analyses.R
Plot MAP covariance matrix for designated host
1 2 3 4 5 6 7 | plot_MAP_covariance(
host,
tax_level = "ASV",
DLM = FALSE,
logratio = "alr",
show_plot = FALSE
)
|
host |
host short name (e.g. ACA) |
tax_level |
taxonomic level at which to agglomerate data |
DLM |
if TRUE, looks for DLM model fits instead of GP model fits |
logratio |
logratio covariance to render (clr and alr currently supported) |
show_plot |
show() plot of first 2 principle coordinates (in addition to rendering first 4 PCoA to files) |
Output are png files of covariance and correlation matrices.
1 | plot_MAP_covariance(host = "ZIZ", tax_level = "ASV")
|
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