DA_by_DESeq2: Wrapper for call_DA_DESeq2 generating reference and target...

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

Wrapper for call_DA_DESeq2 generating reference and target calls

Description

Wrapper for call_DA_DESeq2 generating reference and target calls

Usage

DA_by_DESeq2(
  ref_data,
  data,
  groups,
  oracle_calls = NULL,
  control_indices = NULL
)

Arguments

ref_data	absolute abundance data set (samples x features)
data	relative abundance data set (samples x features)
groups	group (cohort) labels
oracle_calls	optional baseline (true) differential abundance calls
control_indices	if specified, these features are used as the stable features against which to normalize observed abundances (DESeq2-only)

Value

baseline (true) differential abundance calls and calls made on relative abundances

kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.