build_simulated_reference: Generate simulated differential expression for two conditions

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

Generate simulated differential expression for two conditions

Description

Generate simulated differential expression for two conditions

Usage

build_simulated_reference(
  p = 1000,
  log_mean = 1,
  log_var = 4,
  perturb_size = 0.5,
  base_correlation = NULL,
  concentration = 1e+06,
  save_name = NULL
)

Arguments

p	number of features (genes, taxa) to simulate
log_mean	log mean for condition 1
log_var	log variance for condition 1
perturb_size	percent of the log mean to use (on average) as the size of the noise component added to condition 1 to give condition 2
base_correlation	this is the base correlation matrix for simulated features in log space
concentration	concentration parameter for sampling the correlation across feature; if base_correlation is NULL and concentration = LARGE, features are effectively independent
save_name	optional tag to append to saved data file

kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.