calc_DA_discrepancy: Calculates the discrepancy between differential abundance...

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

Calculates the discrepancy between differential abundance calls made on absolute and relative abundances

Description

Calculates the discrepancy between differential abundance calls made on absolute and relative abundances

Usage

calc_DA_discrepancy(
  calls,
  oracle_calls,
  adjusted = TRUE,
  alpha = 0.05,
  beta = NULL
)

Arguments

calls	calls (as a numeric vector of p-values or a character string that can be parsed into one) made on relative abundances (the observed data)
oracle_calls	calls (as a numeric vector of p-values or a character string that can be parsed into one) made on the absolute abundances
adjusted	flag indicating whether or not to perform multiple test correction
alpha	significance threshold after FD adjustment
beta	optional effect size threshold at the scale of the original abundances (i.e. not log scale)

Value

named list of all calls, TPR, and FPR

kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.