parse_Hashimshony: Parse the Hashimshony et al. (2016) mouse fibroblast data set

View source: R/parse_datasets.R

parse_HashimshonyR Documentation

Parse the Hashimshony et al. (2016) mouse fibroblast data set

Description

Parse the Hashimshony et al. (2016) mouse fibroblast data set

Usage

parse_Hashimshony(absolute = TRUE, use_cpm = FALSE, hkg_list = NULL)

Arguments

absolute

flag indicating whether or not to parse absolute abundance data

use_cpm

flag indicating whether or not to convert observed counts to counts per million (CPM)

hkg_list

optional housekeeping gene list; test spike-in abundances against the abundances of these genes, if present

Value

named list of counts and group labels


kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.