DA_by_edgeR: Wrapper for call_DA_edgeR generating reference and target...
In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line
DA_by_edgeR R Documentation
Wrapper for call_DA_edgeR generating reference and target calls
Description
Wrapper for call_DA_edgeR generating reference and target calls
Usage
DA_by_edgeR(ref_data, data, groups, oracle_calls = NULL, use_TMM = FALSE)
Arguments
ref_data
absolute abundance data set (samples x features)
data
relative abundance data set (samples x features)
groups
group (cohort) labels
oracle_calls
optional baseline (true) differential abundance calls
use_TMM
if TRUE, uses the trimmed mean of M-values normalization
Value
baseline (true) differential abundance calls and calls made on
relative abundances
kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.
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| DA_by_edgeR | R Documentation |
Wrapper for call_DA_edgeR generating reference and target calls
Description
Wrapper for call_DA_edgeR generating reference and target calls
Usage
DA_by_edgeR(ref_data, data, groups, oracle_calls = NULL, use_TMM = FALSE)
Arguments
ref_data |
absolute abundance data set (samples x features) |
data |
relative abundance data set (samples x features) |
groups |
group (cohort) labels |
oracle_calls |
optional baseline (true) differential abundance calls |
use_TMM |
if TRUE, uses the trimmed mean of M-values normalization |
Value
baseline (true) differential abundance calls and calls made on relative abundances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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