parse_Hagai: Parse the Hagai et al. (2018) cross-species, cross-cell,...

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

Parse the Hagai et al. (2018) cross-species, cross-cell, multiple condition experiment for mouse unstimulated vs. pIC4 time point

Description

Parse the Hagai et al. (2018) cross-species, cross-cell, multiple condition experiment for mouse unstimulated vs. pIC4 time point

Usage

parse_Hagai(absolute = TRUE, use_cpm = FALSE, hkg_list = NULL)

Arguments

absolute	flag indicating whether or not to parse absolute abundance data
use_cpm	flag indicating whether or not to convert observed counts to counts per million (CPM)
hkg_list	optional housekeeping gene list; test spike-in abundances against the abundances of these genes, if present

Value

named list of counts and group labels

kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.