plot_rug: Renders the "rug" (host x pairwise association matrix) as a...

In kimberlyroche/rulesoflife:

Renders the "rug" (host x pairwise association matrix) as a heatmap.

Description

Renders the "rug" (host x pairwise association matrix) as a heatmap.

Usage

plot_rug(
  rug,
  canonical_col_order = NULL,
  canonical_row_order = NULL,
  row_labels = NULL,
  cluster_obj = NULL,
  save_name = NULL
)

Arguments

rug	heatmap matrix output from summarize_Sigmas()
canonical_col_order	if not NULL, order of pairs (columns) to use
canonical_row_order	if not NULL, order of rows (hosts) to use
row_labels	optional parameter with row labels (ordered host short names)
cluster_obj	an optional pre-computed hierarchical clustering; if included, a dendrogram will be rendered from this
save_name	name with which to save heatmap file

Value

named list with column and row ordering

kimberlyroche/rulesoflife documentation built on May 7, 2023, 11:08 a.m.