plot_trajectory: Visualize inferred logratio trajectories (CLR by default)

In kimberlyroche/rulesoflife:

Visualize inferred logratio trajectories (CLR by default)

Description

Visualize inferred logratio trajectories (CLR by default)

Usage

plot_trajectory(
  sname,
  output_dir,
  coord,
  coord_label = NULL,
  show_observations = FALSE
)

Arguments

sname	host short name indicating which baboon's series to fit
output_dir	specifies the subdirectory of the model fits directory in which to save the predictions
coord	index of logratio to plot
coord_label	optional coord label (e.g. "family Lachnospiraceae")
show_observations	flag indicating whether or not to logratio transform and render the observed data; this can be useful for judging sensitivity of fit

kimberlyroche/rulesoflife documentation built on May 7, 2023, 11:08 a.m.