summarize_Sigmas: Summarize the pairwise correlations (optionally via...

In kimberlyroche/rulesoflife:

Summarize the pairwise correlations (optionally via proportionality) from all fitted models of a given type. Uses MAP estimates if available, otherwise, summarizes full posterior model fits to give a "rug" matrix where rows are hosts and columns are unique pairwise interactions between taxa.

Description

Summarize the pairwise correlations (optionally via proportionality) from all fitted models of a given type. Uses MAP estimates if available, otherwise, summarizes full posterior model fits to give a "rug" matrix where rows are hosts and columns are unique pairwise interactions between taxa.

Usage

summarize_Sigmas(output_dir, use_proportionality = FALSE)

Arguments

output_dir	specifies the subdirectory of the model fits directory in which to look for fitted model output
use_proportionality	flag indicating whether to compute proportionality between features; if FALSE, CLR correlations are computed

Value

named list of "rug" and associated labels

kimberlyroche/rulesoflife documentation built on May 7, 2023, 11:08 a.m.