API for lakhanp1/chipmine
Analyze ChIP-seq Data
| Global functions | |
|---|---|
| add_annotation_titles | Man page Source code |
| best_replicate_peakset | Man page Source code |
| bigwig_profile_matrix | Man page Source code |
| chip_summary | Man page Source code |
| combinatorial_binding_matrix | Man page Source code |
| compare_ChIPseq_replicates | Man page Source code |
| compare_replicates | Man page Source code |
| draw_avg_profile_plot | Man page Source code |
| gene_length_heatmap_annotation | Man page Source code |
| geneset_average_profile | Man page Source code |
| get_TES | Man page Source code |
| get_TF_binding_data | Man page Source code |
| get_expression_heatmap_list | Man page Source code |
| get_fold_change | Man page Source code |
| get_peak_summit_seq | Man page Source code |
| get_polII_expressions | Man page Source code |
| get_polII_signal | Man page Source code |
| get_profile_plot_list | Man page Source code |
| get_sample_information | Man page Source code |
| get_txdb_exons_gr | Man page Source code |
| get_txdb_fiveUtr_gr | Man page Source code |
| get_txdb_introns_gr | Man page Source code |
| get_txdb_threeUtr_gr | Man page Source code |
| get_txdb_transcripts_gr | Man page Source code |
| hello | Man page |
| import_peaks_as_df | Man page Source code |
| import_profile_from_file | Man page Source code |
| import_profiles | Man page Source code |
| merged_profile_matrix_cluster | Man page Source code |
| multi_profile_plots | Man page Source code |
| na_impute | Man page Source code |
| peak_target_matrix | Man page Source code |
| plot_MA_gg | Man page Source code |
| plot_scatter | Man page Source code |
| preProcess_polII_expression | Man page Source code |
| profile_heatmap | Man page Source code |
| profile_matrix_kmeans | Man page Source code |
| region_coverage | Man page Source code |
| region_coverage_matrix | Man page Source code |
| scale_matrix_columns | Man page Source code |
| scale_matrix_rows | Man page Source code |
| signal_heatmap | Man page Source code |
