signal_heatmap: Heatmap for polII binding signal

In lakhanp1/chipmine: Analyze ChIP-seq Data

Description

This function generate a polII binding signal heatmap using ComplexHeatmap package function Heatmap().

Usage

signal_heatmap(
  log2_matrix,
  htName = NULL,
  col_title = NULL,
  legend_title,
  color,
  htSplit = NULL,
  showLegend = TRUE,
  ...
)

Arguments

log2_matrix	a log2 matrix with polII expression values to be plotted as Heatmap
htName	heatmap name. Default: in not provided, col_title is used
col_title	column title for heatmap. If not provided, matrix column names are used. Default: NULL
legend_title	legend title
color	color for heamap generated by ColorRamp2
htSplit	if heatmap rows are to be split, the dataframe or vector with split information. Default: NULL
showLegend	Binary: whether to show legend or not. Default: TRUE
...	Other arguments to Heatmap function

Value

A complexheatmap object i.e. a heatmap which can be directly plotted or added to heatmap list

Examples

NA

lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.