get_TF_binding_data: Get the TF peak annotation data

In lakhanp1/chipmine: Analyze ChIP-seq Data

Description

This function extract the columns from SAMPLE_ID_peaks.annotated.tab file for multiple samples and returns a dataframe.

Usage

get_TF_binding_data(genesDf, exptInfo, allColumns = FALSE)

Arguments

genesDf	Dataframe with genes of interest
exptInfo	Experiment information dataframe generated by get_sample_information()
allColumns	Whether to get all the columns TRUE or FALSE

Value

Dataframe with all columns when allColumns is TRUE. If allColumns = FALSE, "hasPeak.sampleId", "peakId.sampleId", "peakDist.sampleId", "summitDist.sampleId", "peakAnnotation.sampleId", "enrichment.sampleId", "pval.sampleId" columns are returned from TF peak annotation file

Examples

NA

lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.