region_coverage_matrix: Coverage matrix for regions of interest
In lakhanp1/chipmine: Analyze ChIP-seq Data
Description
Usage
Arguments
Value
Examples
View source: R/p09_coverage_functions.R
Description
This function calls region_coverage() interanlly to calculate coverage for
each sample's bigWig file. Remember that the bigWig files should be normalized to
make the coverage scores comparable. Refer to region_coverage() documentation
for the details on coverage calculation.
Usage
1
region_coverage_matrix(regions, exptInfo)
Arguments
regions
A GRanges object
exptInfo
A dataframe with sample information. sampleId and bwFile columns
are used for coverage calculation.
Value
A coverage matrix.
Examples
1
lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.
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Description Usage Arguments Value Examples
View source: R/p09_coverage_functions.R
Description
This function calls region_coverage() interanlly to calculate coverage for
each sample's bigWig file. Remember that the bigWig files should be normalized to
make the coverage scores comparable. Refer to region_coverage() documentation
for the details on coverage calculation.
Usage
1 | region_coverage_matrix(regions, exptInfo)
|
Arguments
regions |
A GRanges object |
exptInfo |
A dataframe with sample information. sampleId and bwFile columns are used for coverage calculation. |
Value
A coverage matrix.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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