geneset_average_profile: Calculate average profile for a gene list
In lakhanp1/chipmine: Analyze ChIP-seq Data
Description
Usage
Arguments
Value
Examples
View source: R/p08_average_profile_functions.R
Description
This method calculates the average profile for gene of interest.
Usage
1
geneset_average_profile(exptInfo, profileMats, genes, cluster = "group_A")
Arguments
exptInfo
Experiment information dataframe
profileMats
a named list of profile matrix.
genes
a vector of gene IDs. Profile matrix will be subset based on this
gene list to calculate average profile
cluster
A group name for current profile. Default: group_A
Value
A dataframe which can be used for plotting average profile
Examples
1
lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.
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Description Usage Arguments Value Examples
View source: R/p08_average_profile_functions.R
Description
This method calculates the average profile for gene of interest.
Usage
1 | geneset_average_profile(exptInfo, profileMats, genes, cluster = "group_A")
|
Arguments
exptInfo |
Experiment information dataframe |
profileMats |
a named list of profile matrix. |
genes |
a vector of gene IDs. Profile matrix will be subset based on this gene list to calculate average profile |
cluster |
A group name for current profile. Default: group_A |
Value
A dataframe which can be used for plotting average profile
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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