best_replicate_peakset: Get good replicate's peakset from two or more ChIPseq...

In lakhanp1/chipmine: Analyze ChIP-seq Data

Description

This function internally uses chipmine::combinatorial_binding_matrix function to generate a peak overlap matrix and selects the peaks which are present in all the replicates. Then it uses the best replicate to extract the target gene infomation.

Usage

best_replicate_peakset(sampleInfo, cdsFile, ...)

Arguments

sampleInfo	Sample information dataframe
cdsFile	BED file with gene information
...	Other arguments for preProcess_macs2_results() function

Value

A dataframe with target gene information for confident peaks

Examples

NA

lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.