plot_MA_gg: Generate MA plot

In lakhanp1/chipmine: Analyze ChIP-seq Data

Description

This method generates MA plot using two numeric columns from dataframe It can also color the genes based on the colorCol variable

Usage

plot_MA_gg(df, s1, s2, title = NA, colorCol, pseudoCount = 0.1, ylim = NULL)

Arguments

df	dataframe with values two columns for which MA plot is to be generated
s1	sample 1 column name
s2	sample 2 column name
title	title to be showed on plot
colorCol	column name which should be used for coloring the points
pseudoCount	A small number to be added to the values to avoid log(0) error. Default: 0.1
ylim	A two element numeric vector for Y-limits of MA plot. Default: c(-4, 4)

Value

a ggplot2 object which has MA plot

Examples

NA

lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.