get_txdb_transcripts_gr: Transcripts GRanges object from TxDB

In lakhanp1/chipmine: Analyze ChIP-seq Data

Description

Transcripts GRanges object from TxDB

Usage

get_txdb_transcripts_gr(txdb, excludeType = NULL, txIds = NULL)

Arguments

txdb	TxDB object which will be used for annotation
excludeType	Types of transcripts to exclude from annotation. Should be a character vector. Default: c("tRNA", "rRNA", "snRNA", "snoRNA", "ncRNA"). This argument work only when TxDB object has TXTYPE column with appropriate transcripy type values.
txIds	A vector of transcript IDs to be used specifically in the annotation process instead of full transcript set. These should be internal tx_ids from TxDB object. This is useful feature to exclude tRNA, rRNA transcripts while annotating the regions. Default: NULL

Value

GRanges object from TxDB

Examples

NA

lakhanp1/chipmine documentation built on March 6, 2021, 9:06 a.m.