calc_diversity: Calculate diversity values
In leffj/mctoolsr: Microbial Community Data Analysis Tools
View source: R/diversity-based.R
calc_diversity R Documentation
Calculate diversity values
Description
Calculate diversity values from a taxa table.
Usage
calc_diversity(tax_table, metric)
Arguments
tax_table
The taxa table.
metric
The diversity metric to calculate. Acceptable values are:
'richness', 'shannon', and 'simpson'.
Details
Richness is the number of unique species per sample. Simpson's
diversity metric (1 - D) quantifies evenness, and Shannon diversity is a
combination of richness and evenness.
Value
A numeric vector providing the specificed diversity metric for each
sample.
Examples
calc_diversity(fruits_veggies$data_loaded, "shannon")
leffj/mctoolsr documentation built on Aug. 5, 2022, 1:27 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/diversity-based.R
| calc_diversity | R Documentation |
Calculate diversity values
Description
Calculate diversity values from a taxa table.
Usage
calc_diversity(tax_table, metric)
Arguments
tax_table |
The taxa table. |
metric |
The diversity metric to calculate. Acceptable values are: 'richness', 'shannon', and 'simpson'. |
Details
Richness is the number of unique species per sample. Simpson's diversity metric (1 - D) quantifies evenness, and Shannon diversity is a combination of richness and evenness.
Value
A numeric vector providing the specificed diversity metric for each sample.
Examples
calc_diversity(fruits_veggies$data_loaded, "shannon")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.