calc_mean_dissimilarities: Calculate mean dissimilarities using a metadata factor

In leffj/mctoolsr: Microbial Community Data Analysis Tools

Calculate mean dissimilarities using a metadata factor

Description

Calculate mean dissimilarities across all levels of a given factor

Usage

calc_mean_dissimilarities(
  dm,
  metadata_map,
  summarize_by_factor,
  return_map = FALSE
)

Arguments

dm	Dissimilarity matrix - typically created using calc_dm.
metadata_map	The metadata mapping dataframe.
summarize_by_factor	Category in mapping file to summarize by.
return_map	Whether or not to return summarized mapping files. If true, will return a list (default: FALSE).

Value

Mean dissimilarities.

Examples

DM = calc_dm(fruits_veggies$data_loaded)
MD = calc_mean_dissimilarities(DM, fruits_veggies$map_loaded, "Sample_type")

leffj/mctoolsr documentation built on Aug. 5, 2022, 1:27 a.m.