plot_diversity: Plot diversity values
In leffj/mctoolsr: Microbial Community Data Analysis Tools
View source: R/diversity-based.R
plot_diversity R Documentation
Plot diversity values
Description
Plot diversity using boxplots across levels of a given factor.
Usage
plot_diversity(input, variable, metric)
Arguments
input
The input dataset as loaded by load_taxa_table().
variable
Variable in mapping file to plot by.
metric
Diversity metric to use. Acceptable values are:
'richness', 'shannon', and 'simpson'.
Details
Richness is the number of unique species per sample. Simpson's
diversity metric quantifies evenness, and Shannon diversity is a combination
of richness and evenness.
Examples
plot_diversity(fruits_veggies, "Sample_type", "shannon")
leffj/mctoolsr documentation built on Aug. 5, 2022, 1:27 a.m.
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View source: R/diversity-based.R
| plot_diversity | R Documentation |
Plot diversity values
Description
Plot diversity using boxplots across levels of a given factor.
Usage
plot_diversity(input, variable, metric)
Arguments
input |
The input dataset as loaded by |
variable |
Variable in mapping file to plot by. |
metric |
Diversity metric to use. Acceptable values are: 'richness', 'shannon', and 'simpson'. |
Details
Richness is the number of unique species per sample. Simpson's diversity metric quantifies evenness, and Shannon diversity is a combination of richness and evenness.
Examples
plot_diversity(fruits_veggies, "Sample_type", "shannon")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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