Files in leffj/mctoolsr
Microbial Community Data Analysis Tools

.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
NAMESPACE
R/datasets_documentation.R R/dissimilarity-based.R R/diversity-based.R R/initialize.R R/input_output_filter.R R/mctoolsr.R R/misc_analyses.R R/misc_plots.R R/normalization.R R/taxa_by_sample_type_functions.R R/taxonomy-based.R R/tree-based.R R/utils.R README.Rmd README.md
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data-raw/generate_functions_list.R data-raw/prep_data.R data-raw/update_version.R
data/.Rapp.history
data/fruits_veggies.rda
data/fruits_veggies_OTUs_tree.rda
data/sumtax_example_data.rda
function_list.md
inst/extdata/fruits_veggies_dm.txt
inst/extdata/fruits_veggies_metadata.txt
inst/extdata/fruits_veggies_metadata_2col.txt
inst/extdata/fruits_veggies_taxa.tre
inst/extdata/fruits_veggies_taxa_table_wTax.biom
inst/extdata/fruits_veggies_taxa_table_wTax.txt
man/.Rapp.history
man/add_metadata_to_dm_clmns.Rd man/calc_diversity.Rd man/calc_dm.Rd man/calc_mean_dissimilarities.Rd man/calc_ordination.Rd man/calc_pairwise_permanovas.Rd man/calc_prop_shared_taxa.Rd man/calc_prop_taxa_from_sample_type.Rd man/calc_taxa_changes.Rd man/calc_taxa_means.Rd man/collapse_taxonomy.Rd man/convert_dm_to_3_column.Rd man/convert_to_relative_abundances.Rd man/core_taxa.Rd man/export_otu_table.Rd man/export_taxa_table.Rd man/filter_data.Rd man/filter_dm.Rd man/filter_samples_by_counts.Rd man/filter_taxa_from_input.Rd man/filter_taxa_from_table.Rd man/filter_tree.Rd man/fruits_veggies.Rd man/fruits_veggies_OTUs_tree.Rd man/load_2_dms.Rd man/load_dm.Rd man/load_taxa_table.Rd man/load_tree.Rd man/match_datasets.Rd man/mctoolsr.Rd man/plot_dendrogram.Rd man/plot_diversity.Rd man/plot_nmds.Rd man/plot_ordination.Rd man/plot_taxa_bars.Rd man/plot_ts_heatmap.Rd man/plot_venn_diagram.Rd man/rename_samples.Rd man/return_top_taxa.Rd man/single_rarefy.Rd man/summarize_taxonomy.Rd man/sumtax_example_data.Rd man/taxa_summary_by_sample_type.Rd
mctoolsr.Rproj
tests/testthat.R tests/testthat/test_dissimilarity.R tests/testthat/test_diversity_calculations.R tests/testthat/test_filter_data.R tests/testthat/test_input_output.R tests/testthat/test_misc_analyses.R tests/testthat/test_normalization.R tests/testthat/test_taxonomy.R tests/testthat/test_taxonomy_plots.R tutorials/modifying_plots.Rmd
tutorials/modifying_plots.html
tutorials/modifying_plots.md
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tutorials/modifying_plots_files/figure-html/unnamed-chunk-8-1.png
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vignettes/getting_started.Rmd
vignettes/getting_started.html
leffj/mctoolsr documentation built on Nov. 30, 2017, 1:31 a.m.