plot_nmds: Generate an NMDS Plot Quickly
In leffj/mctoolsr: Microbial Community Data Analysis Tools
plot_nmds R Documentation
Generate an NMDS Plot Quickly
Description
Used to generate a quick ordination.
Usage
plot_nmds(dm, metadata_map = NULL, color_cat, shape_cat)
Arguments
dm
Dissimilarity matrix.
metadata_map
The metadata mapping data frame.
color_cat
The metadata map header used to color points.
shape_cat
[OPTIONAL] The metadata map header used for points' shapes.
Examples
dm = calc_dm(fruits_veggies$data_loaded)
plot_nmds(dm, metadata_map = fruits_veggies$map_loaded, "Sample_type",
"Farm_type")
leffj/mctoolsr documentation built on Aug. 5, 2022, 1:27 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| plot_nmds | R Documentation |
Generate an NMDS Plot Quickly
Description
Used to generate a quick ordination.
Usage
plot_nmds(dm, metadata_map = NULL, color_cat, shape_cat)
Arguments
dm |
Dissimilarity matrix. |
metadata_map |
The metadata mapping data frame. |
color_cat |
The metadata map header used to color points. |
shape_cat |
[OPTIONAL] The metadata map header used for points' shapes. |
Examples
dm = calc_dm(fruits_veggies$data_loaded)
plot_nmds(dm, metadata_map = fruits_veggies$map_loaded, "Sample_type",
"Farm_type")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.