API for leffj/mctoolsr
Microbial Community Data Analysis Tools

Global functions
add_metadata_to_df Source code
add_metadata_to_dm_clmns Man page Source code
calc_diversity Man page Source code
calc_dm Man page Source code
calc_mean_dissimilarities Man page Source code
calc_ordination Man page Source code
calc_pairwise_permanovas Man page Source code
calc_prop_shared_taxa Man page Source code
calc_prop_taxa_from_sample_type Man page Source code
calc_taxa_changes Man page Source code
calc_taxa_means Man page Source code
collapse_taxonomy Man page Source code
compile_taxonomy Source code
convert_dm_to_3_column Man page Source code
convert_one_column_to_matrix Source code
convert_to_relative_abundances Man page Source code
core_taxa Man page Source code
d_treatment_combination Source code
export_otu_table Man page Source code
export_taxa_table Man page Source code
filt_map Source code
filter_data Man page Source code
filter_dm Man page Source code
filter_samples_by_counts Man page Source code
filter_taxa_dit Source code
filter_taxa_from_input Man page Source code
filter_taxa_from_table Man page Source code
filter_tree Man page Source code
fruits_veggies Man page
fruits_veggies_OTUs_tree Man page
get_combination_category Source code
get_metadata Source code
load_2_dms Man page Source code
load_dm Man page Source code
load_taxa_table Man page Source code
load_tree Man page Source code
match_data_components Source code
match_datasets Man page Source code
mctoolsr Man page
mctoolsr-package Man page
onAttach Source code
onLoad Source code
parse_taxonomy Source code
plot_dendrogram Man page Source code
plot_diversity Man page Source code
plot_nmds Man page Source code
plot_ordination Man page Source code
plot_taxa_bars Man page Source code
plot_ts_heatmap Man page Source code
plot_venn_diagram Man page Source code
rename_samples Man page Source code
return_top_taxa Man page Source code
run_2WNP_test Source code
run_KW_test Source code
run_MW_test Source code
run_custom_test Source code
run_test Source code
single_rarefy Man page Source code
summarize_map Source code
summarize_taxonomy Man page Source code
sumtax_example_data Man page
taxa_summary_by_sample_type Man page Source code
warn_missing_taxa_in_list Source code
leffj/mctoolsr documentation built on Nov. 30, 2017, 1:31 a.m.