API for leffj/mctoolsr
Microbial Community Data Analysis Tools
| Global functions | |
|---|---|
| .compile_taxonomy | Source code |
| .filt_map | Source code |
| .filter_taxa_dit | Source code |
| .get_metadata | Source code |
| .match_data_components | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .parse_taxonomy | Source code |
| .run_2WNP_test | Source code |
| .run_KW_test | Source code |
| .run_MW_test | Source code |
| .run_custom_test | Source code |
| .run_test | Source code |
| .summarize_map | Source code |
| .warn_missing_taxa_in_list | Source code |
| add_metadata_to_dm_clmns | Man page |
| calc_diversity | Man page Source code |
| calc_dm | Man page Source code |
| calc_mean_dissimilarities | Man page |
| calc_ordination | Man page Source code |
| calc_pairwise_permanovas | Man page |
| calc_prop_shared_taxa | Man page Source code |
| calc_prop_taxa_from_sample_type | Man page Source code |
| calc_taxa_changes | Man page Source code |
| calc_taxa_means | Man page Source code |
| collapse_taxonomy | Man page Source code |
| convert_dm_to_3_column | Man page |
| convert_to_relative_abundances | Man page Source code |
| core_taxa | Man page Source code |
| export_otu_table | Man page Source code |
| export_taxa_table | Man page Source code |
| filter_data | Man page Source code |
| filter_dm | Man page Source code |
| filter_samples_by_counts | Man page Source code |
| filter_taxa_from_input | Man page Source code |
| filter_taxa_from_table | Man page Source code |
| filter_tree | Man page Source code |
| fruits_veggies | Man page |
| fruits_veggies_OTUs_tree | Man page |
| load_2_dms | Man page Source code |
| load_dm | Man page Source code |
| load_taxa_table | Man page Source code |
| load_tree | Man page Source code |
| match_datasets | Man page Source code |
| mctoolsr | Man page |
| plot_dendrogram | Man page |
| plot_diversity | Man page Source code |
| plot_nmds | Man page |
| plot_ordination | Man page Source code |
| plot_taxa_bars | Man page Source code |
| plot_ts_heatmap | Man page Source code |
| plot_venn_diagram | Man page Source code |
| rename_samples | Man page Source code |
| return_top_taxa | Man page Source code |
| single_rarefy | Man page Source code |
| summarize_taxonomy | Man page Source code |
| sumtax_example_data | Man page |
| taxa_summary_by_sample_type | Man page Source code |
