mctoolsr: Microbial Community Data Analysis Tools

In leffj/mctoolsr: Microbial Community Data Analysis Tools

Microbial Community Data Analysis Tools

Description

The mctoolsr package provides various functions for facilitating data analysis of microbial communities as determined using high throughput sequenceing. The tools generally start with the taxon table and associated metadata after the initial processing has been accomplished.

Loading data into R using mctoolsr

There are multiple functions used to load in data, but the most useful is: load_taxon_table(). This function will make sure your community data and metadata correspond to one another and the samples are in the same order.

Microbial community composition functions

Need to add more documentation here

Taxonomy-based functions

Need to add more documentation here

Diversity-based functions

Need to add more documentation here

leffj/mctoolsr documentation built on Aug. 5, 2022, 1:27 a.m.