Files in lfmerrick21/WhEATBreeders

Wrappers for Genomic Selection

PopVar_Example.Rmd PopVar_Example.md PopVar_WhEATBreeders_Tutorial.Rmd R/BGLR_CV.R R/BGLR_GAGS_CV.R R/BGLR_GAGS_VS.R R/BGLR_GAGS_VS_UT.R R/BGLR_Ordinal_CV.R R/BGLR_Ordinal_GAGS_CV.R R/BGLR_Ordinal_GAGS_VS.R R/BGLR_Ordinal_GAGS_VS_UT.R R/BGLR_Ordinal_VS.R R/BGLR_Ordinal_VS_UT.R R/BGLR_VS.R R/BGLR_VS_UT.R R/Caret_Models_CV.R R/Caret_Models_VS.R R/Caret_Models_VS_UT.R R/Cullis_H2.R R/Extract_ACC.R R/Extract_Pred.R R/Extract_Pred_UT.R R/GAPIT_GS_CV.R R/GAPIT_GS_VS.R R/GAPIT_GS_VS_UT.R R/GE_Matrix.R R/GE_Matrix_IND.R R/GLM_CV.R R/GLM_VS.R R/GLM_VS_UT.R R/Kernel_computation.R R/Location_Processing.R R/MAS_CV.R R/MAS_GAGS_CV.R R/MAS_GAGS_VS.R R/MAS_GAGS_VS_UT.R R/MAS_VS.R R/MAS_VS_UT.R R/MLP_CV.R R/MLP_CV_UN.R R/MTME.R R/MTME_UN.R R/Marker_Effects.R R/Marker_Effects_Allele.R R/PGE_andCV.R R/PGandCV.R R/PGandE.R R/PandG.R R/Sparse_Kernel_Construction.R R/StochasticImpute_rep.R R/VCF_2_numeric.R R/WHEAT.R R/bgl_imputation.R R/boxcox_t.R R/calc_impute_acc.R R/calc_maf_apply.R R/calc_missrate.R R/clean_names.R R/clean_names_op.R R/filter_poly.R R/filter_poly_MAF.R R/filter_poly_mono.R R/get_gen_cv_sets.R R/hello.R R/impute_mean.R R/knn_geno_markers.R R/knn_impute_markers.R R/make_CV_sets.R R/manhattan_plot_Multi.R R/numeric_2_VCF.R R/read_hapmap.R R/read_vcf.R R/rrBLUP_CV.R R/rrBLUP_GAGS_CV.R R/rrBLUP_GAGS_VS.R R/rrBLUP_GAGS_VS_UT.R R/rrBLUP_VS.R R/rrBLUP_VS_UT.R R/sommer_MTMM.R R/summary.BMTMECV.R R/test_mean_impute_cv.R R/write_vcf.R README.md WhEATBreeders_AdjustedMeans_Heritability.Rmd WhEATBreeders_GWAS_MultiTrait_ManhattanPlot.Rmd WhEATBreeders_Tutorial.Rmd WhEATBreeders_Tutorial.md WhEATBreeders_Tutorial_DeepDive_Into_Code.Rmd WhEATBreeders_Tutorial_GS.Rmd WhEATBreeders_Tutorial_GS.md WhEATBreeders_Tutorial_GWAS.Rmd man/hello.Rd