| .onAttach |
Source code
|
| GSEAdv |
Man page
|
| GSEAdv-package |
Man page
|
| IC |
Man page
Source code
|
| Info |
Man page
|
| add |
Man page
|
| add,GeneSetCollection,character,character-method |
Man page
|
| addGenes |
Source code
|
| addPathways |
Source code
|
| addRel |
Source code
|
| adjacency |
Man page
|
| adjacency,GeneSetCollection-method |
Man page
|
| all_in_outer |
Source code
|
| as.GeneSetCollection |
Man page
|
| as.GeneSetCollection,AnnDbBimap-method |
Man page
|
| as.GeneSetCollection,list-method |
Man page
|
| calc.max.nGenes |
Man page
Source code
|
| calc.min.nGenes |
Man page
Source code
|
| calc.nPathways |
Man page
Source code
|
| check |
Man page
|
| check,GeneSetCollection-method |
Man page
|
| check_collectionType |
Source code
|
| check_geneIdType |
Source code
|
| check_size |
Source code
|
| check_vec |
Source code
|
| collectionType,GeneSetCollection-method |
Man page
|
| comb_symm_dif |
Source code
|
| combnGPP |
Man page
|
| combnGPP,GeneSetCollection-method |
Man page
|
| combnPPG |
Man page
|
| combnPPG,GeneSetCollection-method |
Man page
|
| compare |
Man page
Source code
|
| completness |
Man page
Source code
|
| condPerGenes |
Man page
|
| condPerGenes,GeneSetCollection,missing-method |
Man page
|
| condPerGenes,GeneSetCollection,numeric-method |
Man page
|
| condPerPathways |
Man page
|
| condPerPathways,GeneSetCollection,missing-method |
Man page
|
| condPerPathways,GeneSetCollection,numeric-method |
Man page
|
| distrGenes |
Man page
|
| distrGenes,GeneSetCollection-method |
Man page
|
| distrPathways |
Man page
|
| distrPathways,GeneSetCollection-method |
Man page
|
| double.factorial |
Man page
Source code
|
| drop |
Man page
|
| drop,GeneSetCollection,character,character-method |
Man page
|
| drop,GeneSetCollection,character,missing-method |
Man page
|
| drop,GeneSetCollection,missing,character-method |
Man page
|
| drop,GeneSetCollection,missing,numeric-method |
Man page
|
| drop,GeneSetCollection,numeric,missing-method |
Man page
|
| drop,GeneSetCollection,numeric,numeric-method |
Man page
|
| dropRel |
Man page
|
| dropRel,GeneSetCollection,character,character-method |
Man page
|
| duplicatedGenes |
Man page
|
| duplicatedGenes,GeneSetCollection-method |
Man page
|
| duplicatedPathways |
Man page
|
| duplicatedPathways,GeneSetCollection-method |
Man page
|
| edges |
Man page
|
| edges,GeneSetCollection-method |
Man page
|
| equalize |
Man page
Source code
|
| estimate |
Man page
Source code
|
| estimate.nGenes |
Man page
Source code
|
| estimate.nPathways |
Man page
Source code
|
| expand |
Source code
|
| fromGPP |
Man page
Source code
|
| fromGPP_PPG |
Man page
|
| fromGPP_nGenes |
Man page
Source code
|
| fromPPG |
Man page
Source code
|
| fromPPG_GPP |
Man page
Source code
|
| fromPPG_nPathways |
Man page
Source code
|
| fromSizeGenes |
Man page
Source code
|
| fromSizeGenes_sizePathways |
Man page
Source code
|
| fromSizePathways |
Man page
Source code
|
| gene |
Man page
|
| gene,GeneSetCollection,character-method |
Man page
|
| gene,GeneSetCollection,missing-method |
Man page
|
| geneIdType,GeneSetCollection-method |
Man page
|
| genesKegg |
Man page
|
| genesPerGene |
Man page
|
| genesPerGene,GeneSetCollection,character-method |
Man page
|
| genesPerGene,GeneSetCollection,missing-method |
Man page
|
| genesPerPathway |
Man page
Source code
|
| genesPerPathway,GeneSetCollection,character-method |
Man page
|
| genesPerPathway,GeneSetCollection,missing-method |
Man page
|
| h_index |
Man page
Source code
|
| helper_cond |
Source code
|
| helper_distr |
Source code
|
| helper_modify |
Source code
|
| helper_sizes |
Man page
Source code
|
| helper_table2 |
Source code
|
| independence |
Man page
|
| independence,GeneSetCollection-method |
Man page
|
| inverseList |
Man page
Source code
|
| isolation |
Man page
|
| isolation,GeneSetCollection-method |
Man page
|
| keepGPP |
Source code
|
| keepPPG |
Source code
|
| maxIC |
Man page
Source code
|
| modify |
Man page
|
| modify,GeneSetCollection,character,character-method |
Man page
|
| modifyGene |
Source code
|
| modifyPathway |
Source code
|
| modifyRel |
Source code
|
| nEdges |
Man page
|
| nEdges,GeneSetCollection-method |
Man page
|
| nGenes |
Man page
|
| nGenes,GeneSetCollection-method |
Man page
|
| nPaths |
Man page
|
| nPathways |
Man page
|
| nPathways,GeneSetCollection-method |
Man page
|
| nUnique |
Source code
|
| names_vec |
Man page
Source code
|
| nested |
Man page
|
| nested,GeneSetCollection-method |
Man page
|
| pathway |
Man page
|
| pathway,GeneSetCollection,character-method |
Man page
|
| pathway,GeneSetCollection,missing-method |
Man page
|
| pathwaysPerGene |
Man page
Source code
|
| pathwaysPerGene,GeneSetCollection,character-method |
Man page
|
| pathwaysPerGene,GeneSetCollection,missing-method |
Man page
|
| prodT |
Source code
|
| sizeGenes |
Man page
|
| sizeGenes,GeneSetCollection,character-method |
Man page
|
| sizeGenes,GeneSetCollection,missing-method |
Man page
|
| sizePathways |
Man page
|
| sizePathways,GeneSetCollection,character-method |
Man page
|
| sizePathways,GeneSetCollection,missing-method |
Man page
|
| sizesPerGene |
Man page
|
| sizesPerGene,GeneSetCollection,character-method |
Man page
|
| sizesPerGene,GeneSetCollection,missing-method |
Man page
|
| sizesPerPathway |
Man page
|
| sizesPerPathway,GeneSetCollection,character-method |
Man page
|
| sizesPerPathway,GeneSetCollection,missing-method |
Man page
|
| summary |
Man page
|
| summary,GeneSetCollection-method |
Man page
|
| uniq_order |
Source code
|
| unique_translate |
Source code
|
