Man pages for llrs/GSEAdv
Analyze Gene Sets Collections Properites
| add | Add a relationship |
| adjacency | Adjacency of genes in GeneSetCollections |
| as.GeneSetCollection | Convert a list or a Bimap interface into GeneSetCollections |
| calc.max.nGenes | Estimate the max number of genes |
| calc.min.nGenes | Estimate the min number of genes |
| calc.nPathways | Estimate the number of pathways |
| check | Checks a GeneSetCollection |
| combnGPP | The combinations of genes per pathways |
| combnPPG | The combinations of pathways per gene |
| compare | Pathways equal between two GeneSetCollections |
| completness | Number of possible combinations |
| condPerGenes | Conditional probability by genes per pathway |
| condPerPathways | Conditional probability by genes per pathway |
| distrGenes | Distributions of pathways in genes |
| distrPathways | Distributions of genes in pathways |
| double.factorial | Double factorial |
| drop | Remove from a GeneSetCollection |
| dropRel | Remove a relationship from a GeneSetCollection |
| duplicatedGenes | Duplicated genes |
| duplicatedPathways | Duplicated pathways |
| edges | Edges between genes in GeneSetCollections |
| equalize | Convert to characters |
| estimate | Estimate a GeneSetCollection |
| estimate.nGenes | Estimate range of genes |
| estimate.nPathways | Estimate range of pathways |
| fromGPP | Simulate GeneSetCollection |
| fromGPP_nGenes | Simulate a GeneSetCollection |
| fromPPG | Simulate GeneSetCollection |
| fromPPG_GPP | Simulate GeneSetCollection |
| fromPPG_nPathways | Simulate a GeneSetCollection |
| fromSizeGenes | Simulate a GeneSetCollection |
| fromSizeGenes_sizePathways | Create a GeneSetCollection |
| fromSizePathways | Simulate a GeneSetCollection |
| gene | Statistics about genes |
| genesKegg | A GeneSetCollection |
| genesPerGene | Number genes related to a gene |
| genesPerPathway | Genes per pathway |
| GSEAdv | GSEAdv: A package for analyzing gene sets. |
| helper_sizes | Helper for sizes |
| h_index | Calculates H-index |
| IC | Calculate the information content or entropy |
| independence | Checks independence of genes |
| Info | A GeneSetCollection |
| inverseList | Inverts a list |
| isolation | Checks isolated GeneSets |
| maxIC | Calculate the maximal information content or entropy |
| modify | Modify a relationship |
| names_vec | Give a name to a vector |
| nested | Pathways included in other pathways |
| nGenes | Number of genes |
| nPathways | Number of GeneSets |
| pathway | Statistics about pathways |
| pathwaysPerGene | Pathways per gene |
| sizeGenes | Number of genes in pathways of genes |
| sizePathways | Number of pathways in genes of pathways |
| sizesPerGene | Number of different size of pathways per gene |
| sizesPerPathway | Number of different sizes of gene per pathway |
| summary | Calculates some statistics of the GeneSetCollection |
