lubianat/fcoex: FCBF-based Co-Expression Networks for Single Cells

The fcoex package implements an easy-to use interface to co-expression analysisbased on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.

Getting started

Package details

Bioconductor views GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment Pathways RNASeq SingleCell Transcriptomics mRNAMicroarray
Maintainer
LicenseGPL-3
Version0.99.9
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("lubianat/fcoex")
lubianat/fcoex documentation built on Aug. 6, 2020, 3:39 a.m.