API for lutsik/MeDeCom
Decomposition of heterogeneous methylomes
| Global functions | |
|---|---|
| AVAIL.REFS | Man page |
| MAE_A | Source code |
| MeDeCom-package | Man page |
| MeDeComSet | Man page Source code |
| MeDeComSet-class | Man page |
| RHLasso | Source code |
| RMSE_T | Source code |
| RProjSplxBox | Source code |
| RQuadHC | Source code |
| RQuadHC_dummy | Source code |
| RQuadSimplex | Source code |
| RQuadSimplexBox | Source code |
| adjust.nmf.coefs | Source code |
| as.MeDeComSet | Man page Source code |
| assign.components | Source code |
| check_inputs | Source code |
| cluster.refbased | Man page Source code |
| collectResults | Source code |
| combin | Source code |
| component.boxplot | Source code |
| component.dendrogram | Source code |
| component.heatmap | Source code |
| component.mds | Source code |
| component.scatter | Source code |
| components.number.plot | Source code |
| corrmatch | Source code |
| cppTAfact | Source code |
| data.lineplot | Source code |
| densityScatterPlot | Source code |
| do.annotation.plot | Source code |
| do.go.plot | Source code |
| do.lola.plot | Source code |
| drawMarkerBarplot | Source code |
| estimate.accuracy | Source code |
| estimateFoldError | Source code |
| estimatePerformance | Source code |
| example.MeDeComSet | Man page |
| example.cg.annotation | Man page |
| example.dataset | Man page |
| factorize.alternate | Man page Source code |
| factorize.exact | Source code |
| factorize.regr | Man page Source code |
| fetch.annotations | Source code |
| fetch.by.interval | Source code |
| filter.by.linearity | Source code |
| filter.by.mean.diff | Source code |
| filter.by.ttest | Source code |
| generateExample | Source code |
| get.confusion.table | Source code |
| get.cpg.intervals | Source code |
| get.distance.matrix | Source code |
| getLMCs | Man page |
| getLMCs,MeDeComSet-method | Man page |
| getProportions | Man page |
| getProportions,MeDeComSet-method | Man page |
| getStatistics | Man page |
| getStatistics,MeDeComSet-method | Man page |
| getT.empirical | Source code |
| getT.gini | Source code |
| getT.hlasso | Source code |
| getT.intfac | Source code |
| getT.optim | Source code |
| greedymatch | Man page Source code |
| initialize,MeDeComSet-method | Man page |
| introduce.asm | Source code |
| introduce.effects | Source code |
| introduce.imprinting | Source code |
| licols | Source code |
| linear.model | Source code |
| link.to.traits | Source code |
| lmc.annotation.enrichment | Man page Source code |
| lmc.annotation.plots.tables | Man page Source code |
| lmc.go.enrichment | Man page Source code |
| lmc.go.plots.tables | Man page Source code |
| lmc.lola.enrichment | Man page Source code |
| lmc.lola.plots.tables | Man page Source code |
| load.lola.for.medecom | Man page Source code |
| load.ref.set | Source code |
| locus_plot | Man page Source code |
| logLik2 | Source code |
| match.matrix | Source code |
| matchLMCs | Man page Source code |
| mix.populations | Source code |
| onerun.alternate | Source code |
| onerun.cppTAfact | Source code |
| openPDFfile | Source code |
| openPSfile | Source code |
| opt.factorize.exact | Source code |
| pcaProjPlot | Source code |
| pcaVarBarplot | Source code |
| plot.K.selection | Source code |
| plot.correlation.heatmap | Source code |
| plot.cves | Source code |
| plot.errs | Source code |
| plot.lambda.selection | Source code |
| plot.p.val.heatmap | Source code |
| plot.p.val.heatmap.lm | Source code |
| plotLMC.reference | Man page Source code |
| plotLMCs | Man page Source code |
| plotParameters | Man page Source code |
| plotProportions | Man page Source code |
| prepare.average.profile | Source code |
| projectV | Source code |
| proportion.feature.corr | Source code |
| proportion.heatmap | Source code |
| proportion.lineplot | Source code |
| proportion.scatter | Source code |
| quantitative.trait.association | Source code |
| randsplxmat | Source code |
| rank.snp | Source code |
| rmse | Source code |
| run.refbased | Man page Source code |
| run.trait.association | Man page Source code |
| run.trait.association.single | Man page Source code |
| runMeDeCom | Man page Source code |
| select.r.gap | Source code |
| simulate.450k | Source code |
| simulate.ct.profiles | Source code |
| simulate.ind.profiles | Source code |
| simulate.populations | Source code |
| simulate.source.profile | Source code |
| singleRun | Source code |
| submitClusterJob | Source code |
| summarize.patterns | Source code |
| summarizeCVinits | Source code |
| tof | Source code |
| tof.grad | Source code |
| updateT_empirical | Source code |
| updateT_gini | Source code |
| updateT_integer | Source code |
| updateT_multicore | Source code |
| waitForClusterJobs | Source code |
