plotParameters: plotParameters

In lutsik/MeDeCom: Decomposition of heterogeneous methylomes

plotParameters

Description

Parameter selection plots

Usage

plotParameters(
  MeDeComSet,
  cg_subset = 1,
  Ks = integer(),
  lambdas = integer(),
  statistic = "cve",
  minLambda = 0,
  maxLambda = Inf,
  lambdaScale = "native",
  ...
)

Arguments

MeDeComSet	MeDeCom object
cg_subset	integer index of the CpG subset (if no subsets were used)
Ks	values of parameter k to use (by default all k values available in the MeDeComSet are used)
lambdas	values of parameter lambda to use (by default all lambda values available in the MeDeComSet are used)
statistic	if multiple k values are supplied, the statistic which is plotted (defaults to cross-validation error)
minLambda	minimal lambda value
maxLambda	maximal lambda value
lambdaScale	character indicating if native scale or logarithmic scale should be employed for plotting lambda
...	further paramters passed to plot.lambda.selection or plot.K.selection

lutsik/MeDeCom documentation built on July 15, 2024, 4:51 a.m.