cluster.refbased: cluster.refbased

In lutsik/MeDeCom: Decomposition of heterogeneous methylomes

cluster.refbased

Description

This routine performs general hierachical clustering as in the plotLMCs and adds reference methylome profiles to this clustering.

Usage

cluster.refbased(
  ref.run,
  K,
  lambda,
  cg_subset = 1,
  plot.type = "dendrogram",
  ...
)

Arguments

ref.run	A result of run.refbased with the results of runMeDeCom and the reference data matrix
K	Selected number of components
lambda	Selected regularization parameter
cg_subset	Numeric vector representing the CpG sites selected for analysis from the orignial MeDeComSet
plot.type	Type of plot to be created, is passed to plotLMCs
...	Further arguments passed to plotLMCs

Value

A plot object displaying the clustering

Author(s)

Michael Scherer

lutsik/MeDeCom documentation built on July 15, 2024, 4:51 a.m.