getProportions-methods: getProportions-methods

In lutsik/MeDeCom: Decomposition of heterogeneous methylomes

getProportions-methods

Description

Return a matrix of LMCs

Usage

## S4 method for signature 'MeDeComSet'
getProportions(object,
  K = object@parameters$Ks[1], lambda = object@parameters$lambdas[1],
  cg_subset = 1, statistic = "cve")

Arguments

object	object returned by runMeDeCom
K	number of LMCs
lambda	regularlization parameter
cg_subset	used CpG subset, defaults to the full data set
statistic	statistic to be used in returning

Examples

data(example.data)
getProportions(example_MeDeComSet, K=2, lambda=0.001)

lutsik/MeDeCom documentation built on Feb. 15, 2023, 11:32 a.m.