getLMCs-methods: getLMCs-methods

In lutsik/MeDeCom: Decomposition of heterogeneous methylomes

getLMCs-methods

Description

Return a matrix of LMCs

Usage

## S4 method for signature 'MeDeComSet'
getLMCs(
  object,
  K = object@parameters$Ks[1],
  lambda = object@parameters$lambdas[1],
  cg_subset = 1,
  statistic = "cve"
)

Arguments

object	object returned by runMeDeCom
K	number of LMCs
lambda	regularlization parameter
cg_subset	used CpG subset, defaults to the full data set
statistic	statistic to be used in returning

Examples

data(example.data)
getLMCs(example_MeDeComSet, K=2, lambda=0.001)

lutsik/MeDeCom documentation built on July 15, 2024, 4:51 a.m.