MeDeComSet-class: MeDeComSet Class

In lutsik/MeDeCom: Decomposition of heterogeneous methylomes

MeDeComSet Class

Description

Stores the result of a methylation deconvolution experiment

Wrapper function MeDeComSet

Usage

MeDeComSet(parameters, outputs, dataset_info = list())

Arguments

parameters	list of MeDeCom parameters with elements K, integer vector of k values, lambdas, numeric vector of lambda values.
outputs	list of MeDeCom resutls with one element per each used CpG subset.
dataset_info	list with information about the input data set.

Value

an object of class MeDeComSet

Slots

dataset_info

list with information about the input data set.

parameters

list containing parameters of the deconvolution experiment.

outputs

list of deconvolution products for each combination of MeDeCom parameters.

Methods and functions

getStatistics

Returns the value of one goodness-of-fit statistics for a given parameter combination.

getLMCs

Returns a matrix of LMCs for a given parameter combination.

getProportions

Returns a matrix of mixing proportions for a given parameter combination.

plotParameters

Create a parameter selection plot.

plotLMCs

Visualize the LMCs.

plotProportions

Visualize the mixing proportions.

Author(s)

Pavlo Lutsik

lutsik/MeDeCom documentation built on July 15, 2024, 4:51 a.m.