WriteBED: Write 'txLoc' object to a BED file.
In mevers/RNAModR: Functional Analysis of RNA Modifications

Description Usage Arguments Details Author(s) Examples

Write txLoc object to a BED file. See 'Details'.

1	WriteBED(txLoc, file = NULL)

`txLoc`	A `txLoc` object.
`file`	A character string; specifies the filename of the output BED file. If `NULL`, then `file = "sites.bed"`; default is `NULL`.

The function writes entries from a txLoc object to a 6-column BED file (BED6). Note that this process is not "splice-aware", i.e. if an entry spans an intron the BED entry gives the left and right-most genomic coordinate of the feature. If file = NULL, entries will be written to sites.bed.

Maurits Evers, maurits.evers@anu.edu.au

## Not run: 
bedFile <- system.file("extdata",
                       "miCLIP_m6A_Linder2015_hg38.bed",
                       package = "RNAModR")
sites <- ReadBED(bedFile)
txSites <- SmartMap(sites, id = "m6A", refGenome = "hg38")
WriteBED(txSites)

## End(Not run)