Files in mgerault/mineCETSAapp
A shiny app for IMPRINTS.CETSA package

.Rbuildignore
DESCRIPTION
IMPRINTS.CETSA.app.Rproj
NAMESPACE
R/IMPRINTS.CETSA.app.R R/common_prot_loop.R R/compare_enrich.R R/data.R R/gene_concept_net.R R/get_GO_app.R R/get_net_app.R R/get_treat_level.R R/hit_for_cell.R R/hitlist.R R/hitplot_cell.R R/imprints_IS.R R/imprints_barplotting_app.R R/imprints_barplotting_categorize_peptides.R R/imprints_barplotting_peptides.R R/imprints_barplotting_simprof.R R/imprints_categorize_peptides.R R/imprints_cleaved_peptides.R R/imprints_heatmap.R R/imprints_join_peptides.R R/imprints_network.R R/imprints_normalize_peptides.R R/imprints_plotting_isoform_peptides.R R/imprints_read_peptides.R R/imprints_remove_peptides.R R/imprints_sequence_peptides.R R/is_in_zone.R R/join_cetsa.R R/join_drugdata.R R/load_data.R R/point_in_orga.R R/pubmed_search.R R/rem_data.R R/runCETSAapp.R R/run_gsea.R R/save_data.R R/splicing_form_mapping.R R/zzz.R README.md
build/vignette.rds
data-raw/210827_1735_elutriation_imprints_caldiff.txt
data-raw/210827_1739_chemarrest_imprints_caldiff.txt
data-raw/Animal_Cell.png
data-raw/Elu_example_1_raw_joined.txt
data-raw/Elu_example_2_raw_cleaned.txt
data-raw/Elu_example_3_isoform_resolved.txt
data-raw/Elu_example_4_pre_norm.txt
data-raw/Elu_example_5_post_norm.txt
data-raw/Elu_example_6_caldiff.txt
data-raw/Human.json
data-raw/Inital_CETSA_clusters.xlsx
data-raw/Mouse.json
data-raw/all_data.R
data-raw/chemarrest_NN.xlsx
data-raw/chemarrest_Summary.xlsx
data-raw/elutriation_NN.xlsx
data-raw/elutriation_Summary.xlsx
data-raw/example_tobe_consolidated.txt
data-raw/organellar list.xlsx
data/NN_chemarrest.rda
data/NN_elutriation.rda
data/cetsa_gsea_database.rda
data/chemarrest.rda
data/chemarrest_ave.rda
data/drug_data.rda
data/elu_example1_raw_joined.rda
data/elu_example2_raw_cleaned.rda
data/elu_example3_isoform_resolved.rda
data/elu_example4_pre_norm.rda
data/elu_example5_post_norm.rda
data/elu_example6_caldiff.rda
data/elutriation.rda
data/elutriation_ave.rda
data/ev_null_print.rda
data/fig2.rda
data/hitlist_chemarrest.rda
data/hitlist_elutriation.rda
data/img2.rda
data/loca_orga.rda
data/orgatlas_match.rda
data/pr_atlas.rda
data/pr_atlas_mouse.rda
data/rg_list.rda
data/tobe_conso_example.rda
inst/CITATION
inst/doc/IMPRINTS.CETSA.app_doc.R inst/doc/IMPRINTS.CETSA.app_doc.Rmd
inst/doc/IMPRINTS.CETSA.app_doc.html
inst/shiny-examples/myapp/app.R
inst/shiny-examples/myapp/www/IS_figure1.png
inst/shiny-examples/myapp/www/catego_4.png
inst/shiny-examples/myapp/www/catego_9.png
inst/shiny-examples/myapp/www/cells.png
inst/shiny-examples/myapp/www/include_footer.html
inst/shiny-examples/myapp/www/logo.png
inst/shiny-examples/myapp/www/paper.css
man/IMPRINTS.CETSA.app.Rd man/NN_chemarrest.Rd man/NN_elutriation.Rd man/chemarrest.Rd man/chemarrest_ave.Rd man/com_protein_loop.Rd man/compare_enrich.Rd man/elu_example1_raw_joined.Rd man/elu_example2_raw_cleaned.Rd man/elu_example3_isoform_resolved.Rd man/elu_example4_pre_norm.Rd man/elu_example5_post_norm.Rd man/elu_example6_caldiff.Rd man/elutriation.Rd man/elutriation_ave.Rd man/find_in_pubmed.Rd man/gene_concept_net.Rd man/get_GO_app.Rd man/get_net_app.Rd man/get_treat_level.Rd man/hit_for_cell.Rd man/hit_plotcell.Rd man/hitlist.Rd man/hitlist_chemarrest.Rd man/hitlist_elutriation.Rd man/imprints_IS.Rd man/imprints_barplotting_app.Rd man/imprints_barplotting_categorize_peptides.Rd man/imprints_barplotting_peptides.Rd man/imprints_barplotting_simprof.Rd man/imprints_categorize_peptides.Rd man/imprints_cleaved_peptides.Rd man/imprints_heatmap.Rd man/imprints_isoform_peptides.Rd man/imprints_join_peptides.Rd man/imprints_network.Rd man/imprints_normalize_peptides.Rd man/imprints_plotting_isoform_peptides.Rd man/imprints_read_peptides.Rd man/imprints_remove_peptides.Rd man/imprints_sequence_peptides.Rd man/is_in_zone.Rd man/join_cetsa.Rd man/join_drugdata.Rd man/load_data.Rd man/point_in_orga.Rd man/pr_atlas.Rd man/pr_atlas_mouse.Rd man/rem_data.Rd man/runCETSAapp.Rd man/run_gsea.Rd man/save_data.Rd vignettes/IMPRINTS.CETSA.app_doc.R vignettes/IMPRINTS.CETSA.app_doc.Rmd
vignettes/IMPRINTS.CETSA.app_doc.html
mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.