elu_example3_isoform_resolved: Isorform resolved Protein.Group from the shortened...

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

Isorform resolved Protein.Group from the shortened elutriation dataset

Description

The cleaned and filtered raw protein abundance with solved isoforms using ms_isoform_resolve function from IMPRINTS.CETSA package.

Usage

elu_example3_isoform_resolved

Format

## 'elu_example3_isoform_resolved' A data frame with 3167 rows and 15 columns:

id

Uniprot protein ID

description

Protein description

condition

B1_G1

Raw protein abundance of the first bioreplicate of the G1 phase

B1_S

Raw protein abundance of the first bioreplicate of the S phase

B1_G2

Raw protein abundance of the first bioreplicate of the G2 phase

B2_G1

Raw protein abundance of the second bioreplicate of the G1 phase

B2_S

Raw protein abundance of the second bioreplicate of the S phase

B2_G2

Raw protein abundance of the second bioreplicate of the G2 phase

B3_S

Raw protein abundance of the third bioreplicate of the S phase

B3_G1

Raw protein abundance of the third bioreplicate of the G1 phase

B3_G2

Raw protein abundance of the third bioreplicate of the G2 phase

sumUniPeps

Number of unique peptides

sumPSMs

PSMs

countNum

Abundance count from reference channel

Details

See elu_example1_raw_joined

Source

This data were obtained from 7. Dai, L., T. Zhao, X. Bisteau et al. (2018) Modulation of Protein-Interaction States through the Cell Cycle. Cell, 173, 1481-1494.e13.

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.