chemarrest: Chemarrest fold-change dataset

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

Chemarrest fold-change dataset

Description

An IMPRINTS-CETSA dataset containing the log2 fold-change between each bio replicate from different cell cycle phase.

Usage

chemarrest

Format

## 'chemarrest' A data frame with 2777 rows and 59 columns:

id

Uniprot protein ID

description

Protein description

37C_B1_G1S

Log2 fold-change G1S vs G1S phase at 37°C in the first bioreplicate

37C_B1_PM

Log2 fold-change PM vs G1S phase at 37°C in the first bioreplicate

37C_B1_S

Log2 fold-change S vs G1S phase at 37°C in the first bioreplicate

37C_B2_G1S

Log2 fold-change G1S vs G1S phase at 37°C in the second bioreplicate

37C_B2_PM

Log2 fold-change PM vs G1S phase at 37°C in the second bioreplicate

37C_B2_S

Log2 fold-change S vs G1S phase at 37°C in the second bioreplicate

37C_B3_G1S

Log2 fold-change G1S vs G1S phase at 37°C in the third bioreplicate

37C_B3_PM

Log2 fold-change PM vs G1S phase at 37°C in the third bioreplicate

37C_B3_S

Log2 fold-change S vs G1S phase at 37°C in the third bioreplicate

47C_B1_G1S

Log2 fold-change G1S vs G1S phase at 47°C in the first bioreplicate

47C_B1_PM

Log2 fold-change PM vs G1S phase at 47°C in the first bioreplicate

47C_B1_S

Log2 fold-change S vs G1S phase at 47°C in the first bioreplicate

47C_B2_G1S

Log2 fold-change G1S vs G1S phase at 47°C in the second bioreplicate

47C_B2_PM

Log2 fold-change PM vs G1S phase at 47°C in the second bioreplicate

47C_B2_S

Log2 fold-change S vs G1S phase at 47°C in the second bioreplicate

47C_B3_G1S

Log2 fold-change G1S vs G1S phase at 47°C in the third bioreplicate

47C_B3_PM

Log2 fold-change PM vs G1S phase at 47°C in the third bioreplicate

47C_B3_S

Log2 fold-change S vs G1S phase at 47°C in the third bioreplicate

50C_B1_G1S

Log2 fold-change G1S vs G1S phase at 50°C in the first bioreplicate

50C_B1_PM

Log2 fold-change PM vs G1S phase at 50°C in the first bioreplicate

50C_B1_S

Log2 fold-change S vs G1S phase at 50°C in the first bioreplicate

50C_B2_G1S

Log2 fold-change G1S vs G1S phase at 50°C in the second bioreplicate

50C_B2_PM

Log2 fold-change PM vs G1S phase at 50°C in the second bioreplicate

50C_B2_S

Log2 fold-change S vs G1S phase at 50°C in the second bioreplicate

50C_B3_G1S

Log2 fold-change G1S vs G1S phase at 50°C in the third bioreplicate

50C_B3_PM

Log2 fold-change PM vs G1S phase at 50°C in the third bioreplicate

50C_B3_S

Log2 fold-change S vs G1S phase at 50°C in the third bioreplicate

52C_B1_G1S

Log2 fold-change G1S vs G1S phase at 52°C in the first bioreplicate

52C_B1_PM

Log2 fold-change PM vs G1S phase at 52°C in the first bioreplicate

52C_B1_S

Log2 fold-change S vs G1S phase at 52°C in the first bioreplicate

52C_B2_G1S

Log2 fold-change G1S vs G1S phase at 52°C in the second bioreplicate

52C_B2_PM

Log2 fold-change PM vs G1S phase at 52°C in the second bioreplicate

52C_B2_S

Log2 fold-change S vs G1S phase at 52°C in the second bioreplicate

52C_B3_G1S

Log2 fold-change G1S vs G1S phase at 52°C in the third bioreplicate

52C_B3_PM

Log2 fold-change PM vs G1S phase at 52°C in the third bioreplicate

52C_B3_S

Log2 fold-change S vs G1S phase at 52°C in the third bioreplicate

54C_B1_G1S

Log2 fold-change G1S vs G1S phase at 54°C in the first bioreplicate

54C_B1_PM

Log2 fold-change PM vs G1S phase at 54°C in the first bioreplicate

54C_B1_S

Log2 fold-change S vs G1S phase at 54°C in the first bioreplicate

54C_B2_G1S

Log2 fold-change G1S vs G1S phase at 54°C in the second bioreplicate

54C_B2_PM

Log2 fold-change PM vs G1S phase at 54°C in the second bioreplicate

54C_B2_S

Log2 fold-change S vs G1S phase at 54°C in the second bioreplicate

54C_B3_G1S

Log2 fold-change G1S vs G1S phase at 54°C in the third bioreplicate

54C_B3_PM

Log2 fold-change PM vs G1S phase at 54°C in the third bioreplicate

54C_B3_S

Log2 fold-change S vs G1S phase at 54°C in the third bioreplicate

57C_B1_G1S

Log2 fold-change G1S vs G1S phase at 57°C in the first bioreplicate

57C_B1_PM

Log2 fold-change PM vs G1S phase at 57°C in the first bioreplicate

57C_B1_S

Log2 fold-change S vs G1S phase at 57°C in the first bioreplicate

57C_B2_G1S

Log2 fold-change G1S vs G1S phase at 57°C in the second bioreplicate

57C_B2_PM

Log2 fold-change PM vs G1S phase at 57°C in the second bioreplicate

57C_B2_S

Log2 fold-change S vs G1S phase at 57°C in the second bioreplicate

57C_B3_G1S

Log2 fold-change G1S vs G1S phase at 57°C in the third bioreplicate

57C_B3_PM

Log2 fold-change PM vs G1S phase at 57°C in the third bioreplicate

57C_B3_S

Log2 fold-change S vs G1S phase at 57°C in the third bioreplicate

sumUniPeps

Median of the number of unique peptides from all temperatures

sumPSMs

Median of the PSMs from all temperatures

countNum

Median of the abundance count from all reference channel

Source

This data were obtained from 7. Dai, L., T. Zhao, X. Bisteau et al. (2018) Modulation of Protein-Interaction States through the Cell Cycle. Cell, 173, 1481-1494.e13.

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.