hit_for_cell: hit_for_cell

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

hit_for_cell

Description

Function to get subcellular location based on the database from protein Atlas, and coordinates of each protein on the plot cell (img2) according to their location

Usage

hit_for_cell(HIT, organism = c("HUMAN", "MOUSE"), cell_coordinate = TRUE)

Arguments

HIT	Usually, the output from hitlist function; but just has to be a data frame with the columns id, treatment and category
organism	The organism on which you performed your experiment. For now, only 'HUMAN' and 'MOUSE' are available.
cell_coordinate	Logical to randomly assign or not coordinate on the cell png corresponding to the mapped cellular location. Default is TRUE.

Value

Dataframe (format for hit_plotcell)

See Also

hitplot_cell

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.