elu_example5_post_norm: Normalized protein abundance from the shortened elutriation...

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

Normalized protein abundance from the shortened elutriation dataset

Description

A data frame containing the normalized abundance protein from the shortened elutriation dataset.

Usage

elu_example5_post_norm

Format

## 'elu_example5_post_norm' A data frame with 521 rows and 59 columns:

id

Uniprot protein ID

description

Protein description

37C_B1_G1

Normalized protein abundance in G1 phase at 37°C in the first bioreplicate

37C_B1_G2

Normalized protein abundance in G2 phase at 37°C in the first bioreplicate

37C_B1_S

Normalized protein abundance in S phase at 37°C in the first bioreplicate

37C_B2_G1

Normalized protein abundance in G1 phase at 37°C in the second bioreplicate

37C_B2_G2

Normalized protein abundance in G2 phase at 37°C in the second bioreplicate

37C_B2_S

Normalized protein abundance in S phase at 37°C in the second bioreplicate

37C_B3_G1

Normalized protein abundance in G1 phase at 37°C in the third bioreplicate

37C_B3_G2

Normalized protein abundance in G2 phase at 37°C in the third bioreplicate

37C_B3_S

Normalized protein abundance in S phase at 37°C in the third bioreplicate

47C_B1_G1

Normalized protein abundance in G1 phase at 47°C in the first bioreplicate

47C_B1_G2

Normalized protein abundance in G2 phase at 47°C in the first bioreplicate

47C_B1_S

Normalized protein abundance in S phase at 47°C in the first bioreplicate

47C_B2_G1

Normalized protein abundance in G1 phase at 47°C in the second bioreplicate

47C_B2_G2

Normalized protein abundance in G2 phase at 47°C in the second bioreplicate

47C_B2_S

Normalized protein abundance in S phase at 47°C in the second bioreplicate

47C_B3_G1

Normalized protein abundance in G1 phase at 47°C in the third bioreplicate

47C_B3_G2

Normalized protein abundance in G2 phase at 47°C in the third bioreplicate

47C_B3_S

Normalized protein abundance in S phase at 47°C in the third bioreplicate

50C_B1_G1

Normalized protein abundance in G1 phase at 50°C in the first bioreplicate

50C_B1_G2

Normalized protein abundance in G2 phase at 50°C in the first bioreplicate

50C_B1_S

Normalized protein abundance in S phase at 50°C in the first bioreplicate

50C_B2_G1

Normalized protein abundance in G1 phase at 50°C in the second bioreplicate

50C_B2_G2

Normalized protein abundance in G2 phase at 50°C in the second bioreplicate

50C_B2_S

Normalized protein abundance in S phase at 50°C in the second bioreplicate

50C_B3_G1

Normalized protein abundance in G1 phase at 50°C in the third bioreplicate

50C_B3_G2

Normalized protein abundance in G2 phase at 50°C in the third bioreplicate

50C_B3_S

Normalized protein abundance in S phase at 50°C in the third bioreplicate

52C_B1_G1

Normalized protein abundance in G1 phase at 52°C in the first bioreplicate

52C_B1_G2

Normalized protein abundance in G2 phase at 52°C in the first bioreplicate

52C_B1_S

Normalized protein abundance in S phase at 52°C in the first bioreplicate

52C_B2_G1

Normalized protein abundance in G1 phase at 52°C in the second bioreplicate

52C_B2_G2

Normalized protein abundance in G2 phase at 52°C in the second bioreplicate

52C_B2_S

Normalized protein abundance in S phase at 52°C in the second bioreplicate

52C_B3_G1

Normalized protein abundance in G1 phase at 52°C in the third bioreplicate

52C_B3_G2

Normalized protein abundance in G2 phase at 52°C in the third bioreplicate

52C_B3_S

Normalized protein abundance in S phase at 52°C in the third bioreplicate

54C_B1_G1

Normalized protein abundance in G1 phase at 54°C in the first bioreplicate

54C_B1_G2

Normalized protein abundance in G2 phase at 54°C in the first bioreplicate

54C_B1_S

Normalized protein abundance in S phase at 54°C in the first bioreplicate

54C_B2_G1

Normalized protein abundance in G1 phase at 54°C in the second bioreplicate

54C_B2_G2

Normalized protein abundance in G2 phase at 54°C in the second bioreplicate

54C_B2_S

Normalized protein abundance in S phase at 54°C in the second bioreplicate

54C_B3_G1

Normalized protein abundance in G1 phase at 54°C in the third bioreplicate

54C_B3_G2

Normalized protein abundance in G2 phase at 54°C in the third bioreplicate

54C_B3_S

Normalized protein abundance in S phase at 54°C in the third bioreplicate

57C_B1_G1

Normalized protein abundance in G1 phase at 57°C in the first bioreplicate

57C_B1_G2

Normalized protein abundance in G2 phase at 57°C in the first bioreplicate

57C_B1_S

Normalized protein abundance in S phase at 57°C in the first bioreplicate

57C_B2_G1

Normalized protein abundance in G1 phase at 57°C in the second bioreplicate

57C_B2_G2

Normalized protein abundance in G2 phase at 57°C in the second bioreplicate

57C_B2_S

Normalized protein abundance in S phase at 57°C in the second bioreplicate

57C_B3_G1

Normalized protein abundance in G1 phase at 57°C in the third bioreplicate

57C_B3_G2

Normalized protein abundance in G2 phase at 57°C in the third bioreplicate

57C_B3_S

Normalized protein abundance in S phase at 57°C in the third bioreplicate

sumUniPeps

Median of the number of unique peptides from all temperatures

sumPSMs

Median of the PSMs from all temperatures

countNum

Median of the abundance count from all reference channel

Details

See elu_example1_raw_joined

Source

This data were obtained from 7. Dai, L., T. Zhao, X. Bisteau et al. (2018) Modulation of Protein-Interaction States through the Cell Cycle. Cell, 173, 1481-1494.e13.

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.