imprints_barplotting_categorize_peptides: imprints_barplotting_categorize_peptides

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

imprints_barplotting_categorize_peptides

Description

Function to plot the categorized proteins found as hits by the function imprints_cleaved_peptides

Usage

imprints_barplotting_categorize_peptides(
  data,
  data_cleaved,
  treatment,
  control,
  format = c("RESP_peptide", "peptide_one"),
  color = "red",
  pdfname = "categorized_RESP_barplots"
)

Arguments

data	The normalized peptides data set, i.e. the outpout from imprints_normalize_peptides.
data_cleaved	The categorized cleavage hits data set, i.e. the outpout from imprints_categorize_peptides.
treatment	The treatment from which you want to see the plots. Can only be one.
control	The control treatment from your dataset.
format	Format of the plot; either RESP_peptide which will plot the RESP plot and then all peptides separately from the protein or peptide_one which will plot all peptides in one plot for each protein. Default is RESP_peptide.
color	The color of the bar plots.
pdfname	textual label of the pdf file

Value

NULL. Will save a pdf file with ordered and catgorized plots

See Also

imprints_barplotting_peptides

imprints_categorize_peptides

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.