imprints_heatmap: imprints_heatmap

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

imprints_heatmap

Description

Function to get the heatmap from your data.

Usage

imprints_heatmap(
  data,
  hit_summary = NULL,
  NN_data = NULL,
  PRcomplex_data = NULL,
  treatment,
  max_na = 0,
  response = c("both", "S", "D"),
  select_cat = c("CC", "CN", "NC"),
  saveHeat = FALSE,
  file_type = c("png", "pdf"),
  file_name = "Heatmap",
  titleH = "Elutriation heatmap",
  gradient_color = c("#005EFF", "#FFFFFF", "#FF0000"),
  cat_color = list(CC = "#FB4F0B", CN = "#0FAEB9", NC = "#E7B700"),
  back_color = "#FFFFFF",
  border_color = NULL
)

Arguments

data	Output data from imprints_average
hit_summary	The summary file from the hitlist output
NN_data	The NN file from the hitlist output
PRcomplex_data	Output data from imprints_complex_mapping. If not NULL and hit_summary NULL, will print different heatmaps according to the protein complex.
treatment	A character telling the condition from which you want to see the heatmap
max_na	An integer indicating the maximum number of missing values per row (per protein)
response	A character to tell if you want to the destabilized proteins, stabilized or both. Accepted value are 'D' for destabilize, 'S' for stabilized or 'both'.
select_cat	A character vector indicating the categories from which you want to see the heatmap
saveHeat	Logical to tell if you want to save the heatmap
file_type	The format file, either 'png' or 'pdf'.
file_name	The file name
titleH	The title for your heatmap
gradient_color	The color for the gradient of the heatmap. Can only be of length three.
cat_color	A list which contains the colors for each categories you selected.
back_color	The color from the background of the heatmap (can be NULL)
border_color	The color from the border of the plot (can be NULL)

Value

A grob object, the heatmap.

See Also

imprints_average , imprints_complex_mapping

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.