elu_example1_raw_joined: Raw Protein.Group from the shortened elutriation dataset

In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package

Raw Protein.Group from the shortened elutriation dataset

Description

A data frame containing the six Protein.Group files from the raw data of the elutriation dataset. These raw data have been processed with Proteome Discovers version 2.4 and shortened to approximately 500 proteins to showcase the functionnalities of the app and show the expected format.

Usage

elu_example1_raw_joined

Format

## 'elu_example1_raw_joined' A data frame with 3170 rows and 16 columns:

id

Uniprot protein ID

description

Protein description

condition

B1_G1

Raw protein abundance of the first bioreplicate of the G1 phase

B1_S

Raw protein abundance of the first bioreplicate of the S phase

B1_G2

Raw protein abundance of the first bioreplicate of the G2 phase

B2_G1

Raw protein abundance of the second bioreplicate of the G1 phase

B2_S

Raw protein abundance of the second bioreplicate of the S phase

B2_G2

Raw protein abundance of the second bioreplicate of the G2 phase

B3_S

Raw protein abundance of the third bioreplicate of the S phase

B3_G1

Raw protein abundance of the third bioreplicate of the G1 phase

B3_G2

Raw protein abundance of the third bioreplicate of the G2 phase

Mix

Raw protein abundance of the Mix channel

sumUniPeps

Number of unique peptides

sumPSMs

PSMs

countNum

Abundance count from reference channel

Source

This data were obtained from 7. Dai, L., T. Zhao, X. Bisteau et al. (2018) Modulation of Protein-Interaction States through the Cell Cycle. Cell, 173, 1481-1494.e13.

mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.