imprints_normalize_peptides: imprints_normalize_peptides
In mgerault/mineCETSAapp: A shiny app for IMPRINTS.CETSA package
View source: R/imprints_normalize_peptides.R
imprints_normalize_peptides R Documentation
imprints_normalize_peptides
Description
Function to normalize your peptides IMPINTS-CETSA dataset.
Usage
imprints_normalize_peptides(peptides_data, dataset_name = "imprints")
Arguments
peptides_data
The data frame output from imprints_read_peptides. Can also be the path to that file.
dataset_name
The name of your dataset
Details
The function uses the function imprints_normalization from IMPRINTS.CETSA package.
The function apply the VSN model to each temperature set and then call the function removeBatchEffect
from limma package.
Value
The normalized peptides data frame, non log2 transformed.
mgerault/mineCETSAapp documentation built on April 17, 2025, 7:24 p.m.
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View source: R/imprints_normalize_peptides.R
| imprints_normalize_peptides | R Documentation |
imprints_normalize_peptides
Description
Function to normalize your peptides IMPINTS-CETSA dataset.
Usage
imprints_normalize_peptides(peptides_data, dataset_name = "imprints")
Arguments
peptides_data |
The data frame output from |
dataset_name |
The name of your dataset |
Details
The function uses the function imprints_normalization from IMPRINTS.CETSA package.
The function apply the VSN model to each temperature set and then call the function removeBatchEffect
from limma package.
Value
The normalized peptides data frame, non log2 transformed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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