Files in microbiome/HITChipDB
HITChipDB
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/FetchData.R
R/HITChipDB-package.R
R/PlotPhylochip.R
R/ReadParameters.R
R/ReadPhylogeny.R
R/detect.chip.R
R/fetch.sample.info.R
R/firstlib.R
R/get.probedata.R
R/get_hitchip_taxonomy.R
R/hclust.R
R/hit2pseq.R
R/htree.plot.R
R/import_hitchip.R
R/internal.R
R/list.color.scales.R
R/mysql.R
R/preprocess.chipdata.R
R/profiling.R
R/prune16S.R
R/read_hitchip.R
R/relative.abundance.R
R/retrieve.probesets.R
R/show-methods.R
R/summarize.rawdata.R
R/summarize.rpa.R
R/summarize.sum.R
R/summarize_probedata_hitchip.R
R/utilities.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/probe.parameters.rda
inst/extras/.gitignore
inst/extras/document.R
inst/extras/legacy.R
inst/extras/misc.R
man/FetchData.Rd
man/HITChipDB-package.Rd
man/PlotPhylochipHeatmap.Rd
man/ReadParameters.Rd
man/ReadPhylogeny.Rd
man/ScaleProfile.Rd
man/WriteChipData.Rd
man/WriteLog.Rd
man/WriteMatrix.Rd
man/add.heatmap.Rd
man/calculate.hclust.Rd
man/choose.projects.Rd
man/choose.samples.Rd
man/detect.chip.Rd
man/estimate.min.threshold.Rd
man/expandCondition.Rd
man/expandElement.Rd
man/fetch.projects.Rd
man/fetch.sample.info.Rd
man/fetch.samples.Rd
man/get.doligo2.Rd
man/get.phylogeny.info.Rd
man/get.probedata.Rd
man/get.sampleid.Rd
man/get_hitchip_taxonomy.Rd
man/hitchip2physeq.Rd
man/htree.plot.Rd
man/import_hitchip.Rd
man/list.color.scales.Rd
man/list.mysql.projects.Rd
man/mysql.format.Rd
man/n.phylotypes.per.oligo.Rd
man/oligo.bg.correction.Rd
man/phyloarrayConnection.Rd
man/phylotype.rm.list.Rd
man/populate.radiobuttons.Rd
man/preprocess.chipdata.Rd
man/prune16S.Rd
man/read_hitchip.Rd
man/relative.abundance.Rd
man/retrieve.probesets.Rd
man/run.profiling.script.Rd
man/scaling.minmax.Rd
man/summarize.rawdata.Rd
man/summarize.rpa.Rd
man/summarize.sum.Rd
man/summarize_probedata.Rd
man/sync.rm.phylotypes.Rd
man/threshold.data.Rd
vignettes/Oligoheatmap.Rmd
vignettes/Oligoheatmap.md
vignettes/Protocol.md
vignettes/main.R
vignettes/oligoprofileClustering.png
vignettes/vignette.Rmd
vignettes/vignette.md
vignettes/wurcomputer.Rmd
vignettes/wurcomputer.md
